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Page last updated  (1:00pm AEDT)

This page lists the status of third-party software packages currently being prepared for Gadi. 

Gadi software porting is currently in progress. This is not the final list of the software to be provided on Gadi.

NCI will add packages to the list as build-install work progresses through Gadi installation, pre-production and production phases. NCI will endeavour to build and install as many packages as possible on Gadi, subject to compatibility, supportability and demonstrated demand.

In cases where older versions of a software package are considered more stable or preferable by users, and the package is compatible with the Gadi OS and run-time environments, NCI will consider building and installing those versions. Please contact NCI User Support help@nci.org.au ) if you need more information.

NCI will also continue to help users build specialised software in local project environments, as on Raijin. Contact User Support for more information.

Python

NCI will continue to provide Python 2 (2.7.16 - final) and Python 3 with support for optimised numeric libraries and the numpy and SciPy packages on Gadi. NCI is evaluating additional packages for numeric and parallel computing, such as xarray and dask, for inclusion in the core Python distributions. The policy for Python module support on Gadi will be the same as on Raijin: only core Python distributions with numeric functionality (numpy, SciPy) will be supported. Users may build additional third-party modules in local workspaces against the supported distributions. NCI will continue to assist users to build local Python modules as requested.

All users are strongly encouraged to migrate their Python applications to Python 3 as soon as possible. Python 2.7 community development and support will cease in January 2020. NCI will install Python 2.7.16 on Gadi as the final version of Python 2.7. 

Software Status

Status FlagSummary
COMPLETEDPackage has been incorporated into the Gadi OS image or checked in to the master branch of the third-party applications repository.
IN PROGRESSPackage build, install and testing work is currently in progress.
BACKLOGPackage is on the backlog for build and install. 


Computational ChemistryPackageVersionLicensedGadi Status

ABINIT8.0.8b
IN PROGRESS

ADF2019.02YESCOMPLETED

Amber 19YESBACKLOG

ASE3.18.1
COMPLETED

CP2K6.1.0v110
IN PROGRESS

CPMD3.17.1
IN PROGRESS

DALTON2018.2
COMPLETED

DFTB+ 19.1YESCOMPLETED

DMol3 2018YESCOMPLETED

GA5.7
COMPLETED

GAMESSPLUS2010-02
BACKLOG

Gamess-US2019-06-R1, 2019-09-R2
COMPLETED

GaussianG09 E.01YESCOMPLETED

Gaussian G16 C.01YESCOMPLETED

Gaussview5YESCOMPLETED

GaussView 6.0.16YESCOMPLETED

GPAW1.5.1
IN PROGRESS

GROMACS2019.3-gpupascal-plumed
COMPLETED

GULP5
BACKLOG

LAMMPS5-Jun-19
COMPLETED

LIGGGHTS-
BACKLOG

Molden6.2
COMPLETED

Molpro2019.1
COMPLETED

NAMD 2.13YESCOMPLETED

NBO6.0
COMPLETED

NWChem6.8.1
BACKLOG

Open Babel2.4.1
COMPLETED

ORCA 4.2.1YESCOMPLETED

Plumed2.52
COMPLETED

Psi41.3.2
COMPLETED

Q-Chem5.2
COMPLETED

Quantum Espresso6.4.1
COMPLETED

SIESTA4.1
COMPLETED

Tinker-HP1.1
COMPLETED

TURBOMOLE7.2YESCOMPLETED

TmoleX17
COMPLETED

VASP 5.4.4YESCOMPLETED

VMD 1.9.3YESCOMPLETED

Voro++0.4.6
BACKLOG










BioinformaticsPackageVersionLicensedGadi Status

ABySS2.2.3
COMPLETED

BEAST1.10.4
COMPLETED

BEDTools2.28.0
COMPLETED

BLAST2.7.1p
BACKLOG

GARLI2.0.1
BACKLOG

samtools1.9
COMPLETED

SOAPdenovo2.41
COMPLETED

Tophat/Bowtie22.1.1/2.3.5.1
COMPLETED

Velvet1.2.10
COMPLETED










Math LibrariesPackageVersionLicensedGadi Status

Boost1.71.0
COMPLETED

FFTW33.3.8
COMPLETED

FFTW3-mkl2019.3.199
COMPLETED

gmp6.1.2
IN PROGRESS

GSL2.6
COMPLETED

Harminv1.4.1
IN PROGRESS

ScaLAPACK

COMPLETED

NAG

BACKLOG

MKL2019.3.199
COMPLETED










Statistics and MathematicsPackageVersionLicensedGadi Status

Mathematica 12YESCOMPLETED

MATLAB R2019bYESBACKLOG

Octave4.4.0
BACKLOG

PETSc3.12.2
COMPLETED

R3.6.1
COMPLETED










CFD and EngineeringPackageVersionLicensedGadi Status

ABAQUS 6.12YESIN PROGRESS

Ansys 2019r1YESIN PROGRESS

CFX2019r1
IN PROGRESS

COMSOL 5.4YESIN PROGRESS

Fluent 2019r1YESIN PROGRESS

Gmsh4.4.1
COMPLETED

LS-Dyna R11.0.0-mppYESIN PROGRESS

OpenFOAM7
COMPLETED










Climate and Earth ModelingPackageVersionLicensedGadi Status

CDO1.9.8, 1.7.2
COMPLETED

ESMF7.1.0
COMPLETED

Ferret6.96
BACKLOG

NCL6.4.0
IN PROGRESS

NCO4.7.7
COMPLETED










Debugging, Profiling, SimulationPackageVersionLicensedGadi Status

Arm HPC Tools -- formerly Allinea7.0.0
BACKLOG

Darshan3.0.1-ompi-2.1.1
BACKLOG

Intel Amplifier

COMPLETED

Intel Inspector2019.3.590798
COMPLETED

Intel Trace Analyzer

COMPLETED

Intel Trace Collector

COMPLETED

Intel VTune2019.3.0.590814
COMPLETED

IPM2.0.6
COMPLETED

padb3.3
BACKLOG

Papi5.7.0
COMPLETED

Score-P5.0
BACKLOG

Totalview8.11.0-3
IN PROGRESS

valgrind3.15.0
COMPLETED

Vampir9.3.0
BACKLOG










Code DevelopmentPackageVersionLicensedGadi Status

cmake3.15.3
COMPLETED

Git

COMPLETED

mercurial4.9.1
BACKLOG

SCons3.1.1
COMPLETED

subversion1.9.0
COMPLETED










ScriptingPackageVersionLicensedGadi Status

Julia1.1.0
IN PROGRESS

Perl5.26.3
COMPLETED

Python2*2.7.16 (*)
COMPLETED

Python33.7.4
COMPLETED

Tcl/Tk

COMPLETED










Data File Formats and Management UtilitiesPackageVersionLicensedGadi Status

GDL0.94
BACKLOG

HDF44.2.14
COMPLETED

HDF51.10.5(p), 1.8.21(p)
COMPLETED

HDF-EOS2.20
COMPLETED

IRAF2.16
BACKLOG

nccmp1.8.5
COMPLETED

Ncview2.1.7
COMPLETED

netCDF4.7.1, 4.6.3
COMPLETED

Paraview5.7.0
IN PROGRESS

Silo4.10.2
COMPLETED

SZIP2.1.1
COMPLETED

UDUNITS2.2.26
COMPLETED

Xerces3.2.2
COMPLETED

VTK8.2.0
COMPLETED










Machine LearningPackageVersionLicensedGadi Status

tensorflow 1.12-cudnn7.1-py36
IN PROGRESS

Pytorch1.4.0
COMPLETED










Geospatial ToolsPackageVersionsLicensedGadi Status

GDAL3.0.2
COMPLETED

PROJ6.2.1
COMPLETED










PhysicsPackageVersionLicensedGadi Status

Geant410.02.p02
IN PROGRESS










PhotonicsPackageVersionLicensedGadi Status

FDTD

BACKLOG

libctl4.3.0
IN PROGRESS

Meep1.10.0
BACKLOG










Parallel ProgrammingPackageVersionLicensedGadi Status

Intel Compilers12019.3.199, 2019.4.243, 2019.5.281
COMPLETED

Intel MPI2019.3.199, 2019.4.243, 2019.5.281
COMPLETED

OpenMPI2.1.6, 3.0.4, 3.1.4, 4.0.1, 4.0.2
COMPLETED

mpi4py3.0.2
IN PROGRESS

CUDA 10.1
COMPLETED










Graphics, Visualization,
Image Processing
PackageVersionLicensedGadi Status

CGAL4.12.2
BACKLOG

FFMPEG4.1.3
COMPLETED

GNUplot5.2.4
COMPLETED

GTK+2.24.21
COMPLETED

IDL8.2
IN PROGRESS

jasper2.0.16
COMPLETED

MESA11.2.2
BACKLOG










Network and Grid ServicesPackageVersionLicensedGadi Status

bbcp17.12.00.00.0
BACKLOG

Dillo3.0.3
BACKLOG

ssh-
COMPLETED

SFTP-
COMPLETED

VNC0.9.13
BACKLOG


1) The Intel C and Fortran compilers are now unified under the 'intel-compiler' module. 



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