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1. Prerequisites
- You should be a member of NCI project "dk92"
- Make a copy of the NCI Data Analysis Example Notebooks in one of your working directories
- Some notebooks will require you to access specific dataset projects. The data projects you will need to join are detailed in each notebook.
2. Start a JupyterLab session.
You can start a JupyterLab session from either OOD or ARE.
2.1 JupyterLab at OOD
Follow our JupyterLab User Guide to launch a JupyterLab session at OOD. Please note that the OOD JupyterLab session utilize cloud resources which is separated from Gadi ( i.e. home directory, file system, queue etc.). You will need to
- Choose the appropriate compute resources
- Click "advanced options" and
- Type in "/g/data/dk92/apps/Modules/modulefiles" in the "Module directories" box.
- Type in "NCI-data-analysis/2022.06" in the "Modules" box.
- Click the "Launch" button to start a JupyterLab session.
2.2 JupyterLab at ARE
Follow our JupyterLab User Guide to launch a JupyterLab session at ARE. Please note the ARE JupyterLab session utilise Gadi resources. You will need to
- Choose the appropriate compute resources
- Click "advanced options" and
- Type in "/g/data/dk92/apps/Modules/modulefiles" in the "Module directories" box.
- Type in "NCI-data-analysis/2022.06" in the "Modules" box.
- Click the "Launch" button to start a JupyterLab session.