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In the notebook it calls auxiliary functions defined in other files anther file hosted in the same GitHub repository. Download the files file to the working directory as below.
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login-node $ wget https://raw.githubusercontent.com/clara-parabricks/rapids-single-cell-examples/5ca2a69d852c2a7ad843b57209e8fdce450336f7/notebooks/utils.py -P $WORKDIR login-node $ wget https://raw.githubusercontent.com/clara-parabricks/rapids-single-cell-examples/5ca2a69d852c2a7ad843b57209e8fdce450336f7/notebooks/rapids_scanpy_funcs.py -P $WORKDIR |
Please note, we use the v2021.12.0 version notebook. The url file can be different for these two files in other branches.
Start an Interactive Job on a GPU Node and Initiate the Dask LocalCUDACluster
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