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[abc123@ood-vn1 ~]$ module use /g/data/dk92/apps/Modules/modulefiles [abc123@ood-vn1 ~]$ module load NCI-data-analysis/222022.06 [abc123@ood-vn1 ~]$ julia _ _ _ _(_)_ | Documentation: https://docs.julialang.org (_) | (_) (_) | _ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help. | | | | | | |/ _` | | | | |_| | | | (_| | | Version 1.7.2 (2022-02-06) _/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release |__/ | julia> DEPOT_PATH 1-element Vector{String}: "/opt/julia" (@v1.7) pkg> st GraphIO No Matches in `/opt/julia/environments/v1.7/Project.toml` julia> ENV["PROJECT"] "z00" julia> pushfirst!(DEPOT_PATH,"/g/data/"*ENV["PROJECT"]*"/.julia") 2-element Vector{String}: "/g/data/z00/.julia" "/opt/julia" shell> mkdir -p /g/data/z00/.julia/environments/v1.7 shell> touch /g/data/z00/.julia/environments/v1.7/Project.toml (v1.7) pkg> st Status `/g/data4/z00/.julia/environments/v1.7/Project.toml` (empty project) Resolving package versions... Installed Compat ------------ v4.1.0 Installed ArnoldiMethod ----- v0.2.0 Installed GraphIO ----------- v0.6.0 Installed Graphs ------------ v1.5.0 Updating `/g/data4/z00/.julia/environments/v1.7/Project.toml` [aa1b3936] + GraphIO v0.6.0 Updating `/g/data4/z00/.julia/environments/v1.7/Manifest.toml` ... Precompiling project... 5 dependencies successfully precompiled in 16 seconds (9 already precompiled) (v1.7) pkg> test GraphIO Testing GraphIO Status `/local/z00/abc123/tmp/jl_jswoue/Project.toml` [944b1d66] CodecZlib v0.7.0 [8f5d6c58] EzXML v1.1.0 [aa1b3936] GraphIO v0.6.0 [86223c79] Graphs v1.5.0 [fae87a5f] ParserCombinator v2.1.1 [ae029012] Requires v1.3.0 [699a6c99] SimpleTraits v0.9.4 [8bb1440f] DelimitedFiles `@stdlib/DelimitedFiles` [8dfed614] Test `@stdlib/Test` Status `/local/z00/abc123/tmp/jl_jswoue/Manifest.toml` [ec485272] ArnoldiMethod v0.2.0 ... Test Summary: | Pass Total GraphIO | 152 152 Testing GraphIO tests pass julia> popfirst!(DEPOT_PATH) "/g/data/z00/.julia" (@v1.7) pkg> st Pluto Status `/opt/julia/environments/v1.7/Project.toml` [c3e4b0f8] Pluto v0.14.7 |
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To install a package maintained in the Julia Package Listing requires internet access. Unlike Julia running in an OOD session which by default has the access to the external network, Julia notebook has to be running inside an ARE session that requests resources from `copyq` queue to get the internet access. [we might need to include analysis queue in the future]
The above example is also available in \[this notebook\] [writing another notebook to github].
Gadi Nodes
Not all gadi nodes have the access to the external network. Ideally, it is feasible to install and test Julia packages on the login node. However, If the installation or the test is too big to run on a login node and doesn't comply with the login node resource usage limit, simply submit an interactive copyq job and do the installation/test from there.
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