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You can check the versions installed in Gadi with a module query:

$ module avail nccmp

We normally recommend using the latest version available and always recommend to specify the version number with the module command:

$ module load nccmp/1.8.5.0

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Also note that you must include -l storage=scratch/ab12+gdata/yz98 to the qsub command below if the job needs access to /scratch/ab12/ and /g/data/yz98/. Details on https://opus.nci.org.au/display/Help/PBS+Directives+Explained.

$ qsub -I -P a00 -q normal -l ncpus=1,mem=2GB,jobfs=8GB,walltime=00:30:00,wd

When the interactive job starts on Gadi, execute the followings commands:

# Load module, always specify version number.
$ module load nccmp/1.8.5.0

# Run nccmp application
$ nccmp [Options] file1 [file2]

For more information about nccmp command's Options see nccmp's help information:

# Load module, always specify version number.
$ module load padb/3.2

$ nccmp --help

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