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#!/bin/bash

#PBS -P a00
#PBS -q normal
#PBS -l ncpus=1
#PBS -l mem=2GB
#PBS -l jobfs=8GB
#PBS -l walltime=00:30:00
#PBS -l wd

# Load module, always specify version number.
module load R/4.1.0

# Must include `#PBS -l storage=scratch/ab12+gdata/yz98` if the job
# needs access to `/scratch/ab12/` and `/g/data/yz98/`. Details on:
# https://opus.nci.org.au/display/Help/PBS+Directives+Explained.

# Run R application
R --vanilla < input.r > output

#!/bin/bash

#PBS -q normal
#PBS -l ncpus=2
#PBS -l mem=4GB
#PBS -l jobfs=16GB
#PBS -l walltime=00:15:00
#PBS -l wd

# Load module, always specify version number.
module load R/4.1.0

# Set number of OMP threads
export OMP_NUM_THREADS=$PBS_NCPUS

# Must include `#PBS -l storage=scratch/ab12+gdata/yz98` if the job
# needs access to `/scratch/ab12/` and `/g/data/yz98/`. Details on:
# https://opus.nci.org.au/display/Help/PBS+Directives+Explained.

# Run R application
R --vanilla -f input.r > output